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(Chest. 2001;119:5-7.)
© 2001 American College of Chest Physicians

Appropriate Microbiological Testing in Community-Acquired Pneumonia

Richard G. Wunderink, MD, FCCP and Grant W. Waterer, MBBS (Memphis, TN ).

Dr. Wunderink is Director of Clinical Research and Dr. Waterer is Pulmonary Host Defense Fellow at Methodist Le Bonheur Healthcare. Dr. Waterer has been supported by the Methodist Le Bonheur Healthcare Foundation and the Athelstan and Amy Saw Medical Research Fellowship from the University of Western Australia.

Correspondence to: Richard G. Wunderink, MD, FCCP, Methodist Le Bonheur Healthcare, 1265 Union Ave, 501 Crews Wing, Memphis, TN 38104-2499; e-mail: wunderiR{at}methodisthealth.org

The appropriate microbiological investigation of the patient admitted with community-acquired pneumonia (CAP) remains a contentious issue. Several arguments favor microbiological investigation. First, the pathogen identified may be resistant to the chosen empiric antibiotic therapy. Second, identification of the pathogen may allow streamlining of antibiotic therapy, thereby reducing cost and possibly reducing the development of antibiotic resistance. Third, accurate epidemiologic data are required in order to design appropriate empiric therapy.

The countering arguments are that the currently available tests have insufficient sensitivity to significantly influence the choice of antibiotic therapy. Differences in the availability of microbiological resources and expertise at individual institutions, as well as local differences in microbiological etiology of CAP, significantly impact the yield of common tests, such as sputum Gram’s staining.

Evidence that identifying a pathogen improves outcome in patients with CAP is also lacking. Two studies of CAP have shown that infection with an organism subsequently shown to be resistant to initial empiric antibiotic therapy is an independent predictor of poor outcome.1 2 However, when change is required due to antibiotic failure, culture-based changes do not necessarily result in better outcomes than does an empiric, non-culture-directed change in therapy.3 It may be argued that knowledge of a probable pneumococcal infection is reassuring if a patient is not responding to therapy several days later. However, in a recent study4 of patients with CAP who were not responding to empiric therapy, secondary nosocomial infection was not only the second most common cause, but the only one independently associated with fatal outcomes. Knowledge of the likely pathogen is, therefore, not necessarily helpful in managing patients who are not responding to initial therapy.

The ability to streamline antibiotic therapy is also questionable. As all current guidelines for empiric therapy of CAP recognize,5 6 pneumococcal infection must be covered in the choice of initial antibiotic therapy. Recognition of probable pneumococcal infection on a sputum Gram’s stain or urinary antigen test is therefore unlikely to alter a physician’s choice of antibiotic therapy, particularly in regions with a significant incidence of penicillin resistance. Even positive results of blood cultures do not lead routinely to narrowing of the choice of antibiotic therapy.7 Given the increased recognition of polymicrobial CAP (up to one third to one half of patients in some regions),8 9 10 and some suggestion of improved outcome with combination therapy of bacteremic pneumococcal CAP,11 the reluctance to switch to narrow-spectrum monotherapy may be appropriate.

Accurate etiologic information to design appropriate empiric therapy for patients with CAP is clearly needed. However, given the low yields of investigations in patients with mild-to-moderate CAP, obtaining this information in an ad hoc fashion has significant risks. Since invasive pneumococcal isolates are significantly less likely to be drug resistant than noninvasive specimens,12 reliance on blood cultures alone would underestimate the true prevalence of antibiotic resistance. If information were obtained only from blood and sputum cultures, atypical pathogens would only rarely be identified, skewing information regarding causative etiologies. Only with a comprehensive microbiological survey, using all available diagnostic techniques, can accurate etiologic data be obtained. This is clearly too expensive and difficult to do on a routine basis, and a more practical approach would be to use periodic comprehensive surveys.

In an ideal world, clinicians would always prefer to know the causative organism and antibiotic sensitivity for patients with CAP, even if the diagnostic yield of an individual test is low. However, in today’s cost-conscious health-care environmental, the expense for that reassurance may be excessive. For example, Chalasani et al13 found that $34,000 was spent on blood cultures for seven patients with a blood culture-directed change in therapy. However, the current diagnosis-related group-based reimbursement does recognize the importance of identifying a pathogen by providing a financial incentive to do so, partially offsetting the cost of diagnostic testing.

So should diagnostic testing in patients with CAP be completely abandoned or left only to certain institutions? The article in this issue of CHEST by Theerthakarai and colleagues (see page 181) provides data to support a compromise position. They demonstrated low yields of sputum Gram’s stain, sputum culture, and blood culture in patients with mild CAP based on the pneumonia severity index of Fine et al.14 Even the most ardent supporters of aggressive diagnosis in patients with CAP do not recommend diagnostic testing in outpatients with CAP. This study supports extending that recommendation to hospitalized CAP patients whose severity indices would suggest that they could have been managed as outpatients without the social factors, age, or other concerns that led to inpatient treatment.

Conversely, in studies focused on patients with severe CAP, the yield of standard microbiological techniques is substantially higher. This is particularly true of the yield from blood cultures, a reflection of bacteremia as an independent predictor of worse outcome from CAP.15 Given the much greater risk of adverse outcome in patients with severe CAP, and the much greater likelihood of positive results, more aggressive investigation in patients with severe CAP seems prudent. Investigation of patients with specific risk factors for drug-resistant pathogens, such as those who received the frequent antibiotics for bronchiectasis or chronic bronchitis,2 16 also would seem to be appropriate.

In addition to stratification by severity, the degree of diagnostic workup should also be proportional to the type of empiric therapy. Most recommended empiric regimens suggest coverage for the possibilities of penicillin-resistant Streptococcus pneumoniae and Legionella.5 6 If the empiric antibiotics do not cover these microorganisms, a more aggressive diagnostic workup also may be warranted, especially in patients with severe CAP. An aggressive diagnostic approach to patients who either have nonresponding or progressive CAP is also likely to be a high-yield exercise. Arancibia et al4 recently have demonstrated that a definite etiology could be established in 65% of these patients. In particular, antibiotic-resistant microorganisms in patients with nonresponding pneumonia and nosocomial superinfection in patients with progressive pneumonia could frequently be documented.

Obtaining sputum and/or blood cultures should clearly not be used as a marker of quality of care in patients with CAP, as suggested by some external review agencies. Insistence on obtaining sputum or blood cultures prior to the initiation of antibiotic therapy may conflict directly with an emphasis on avoiding delay in providing the first dose of an antibiotic, a quality-of-care issue that has been demonstrated to affect outcome.17

Recommendations against routine diagnostic testing are based on the lack of sensitivity of and the turnaround time of the currently available tests. Newer diagnostic tools, such as the detection of microbial DNA using a variety of polymerase chain reaction (PCR)-based techniques, show considerable promise. The ability to rapidly screen not only for pathogens but also for antibiotic resistance either with PCR or other molecular diagnostic techniques could substantially alter our approach to the management of patients with CAP in the future. Until then, the stratification of the diagnostic workup by severity, patient characteristics, and anticipated empiric antibiotic therapy is likely to lead to the most cost-effective overall care of patients with CAP.

References

  1. Leroy, O, Santré, C, Beuscart, C, et al (1995) A five-year study of severe community-acquired pneumonia with emphasis on prognosis in patients admitted to an intensive care unit. Intensive Care Med 21,24-31[CrossRef][ISI][Medline]
  2. Torres, A, Serra-Batlles, J, Ferrer, A, et al (1991) Severe community-acquired pneumonia: epidemiology and prognostic factors. Am Rev Respir Dis 144,312-318[ISI][Medline]
  3. Sanyal, S, Smith, PR, Saha, AC, et al (1999) Initial microbiologic studies did not affect outcome in adults hospitalized with community-acquired pneumonia. Am J Respir Crit Care Med 160,346-348[Abstract/Free Full Text]
  4. Arancibia, F, Ewig, S, Martinez, JA, et al (2000) Antimicrobial treatment failures in patients with community-acquired pneumonia. Am J Respir Crit Care Med 162,154-160[Abstract/Free Full Text]
  5. Niederman, MS, Bass, JB, Campbell, GD, et al (1993) Guidelines for the initial management of adults with community-acquired pneumonia: diagnosis, assessment of severity, and initial antimicrobial therapy. Am Rev Respir Dis 148,1418-1426[ISI][Medline]
  6. Bartlett, JG, Breiman, RF, Mandell, LA, et al (1998) Community-acquired pneumonia in adults: guidelines for management: the Infectious Diseases Society of America. Clin Infect Dis 26,811-838[ISI][Medline]
  7. Waterer, GW, Jennings, SG, Wunderink, RG (1999) The impact of blood cultures on antibiotic therapy in pneumococcal pneumonia. Chest 116,1278-1281[Abstract/Free Full Text]
  8. Lieberman, D, Schlaeffer, F, Boldur, I, et al (1996) Multiple pathogens in adult patients admitted with community-acquired pneumonia: a one year prospective study of 346 consecutive patients. Thorax 51,179-184[Abstract]
  9. Neill, AM, Martin, IR, Weir, R, et al (1996) Community-acquired pneumonia: etiology and usefulness of severity criteria on admission. Thorax 51,1010-1016[Abstract]
  10. . The Nordic Atypical Pneumonia Study Group. (1997) Atypical pneumonia in the Nordic countries: etiology and clinical results of a trial comparing fleroxacin and doxycycline. J Antimicrob Chemother 39,499-508[Abstract/Free Full Text]
  11. Mufson, MA, Stanek, RJ (1999) Bacteremic pneumococcal pneumonia in one American city: a 20-year longitudinal study, 1978–1997. Am J Med 107,34S-43S[Medline]
  12. Winston, LG, Perlman, JL, Rose, DA, et al (1999) Penicillin-nonsusceptible Streptococcus pneumoniae at San Francisco General Hospital. Clin Infect Dis 29,580-585[ISI][Medline]
  13. Chalasani, NP, Valdecanas, MAL, Gopal, AK, et al (1995) Clinical utility of blood cultures in adult patients with community-acquired pneumonia without defined underlying risks. Chest 108,932-936[Abstract/Free Full Text]
  14. Fine, MJ, Auble, TE, Yealy, DM, et al (1997) A prediction rule to identify low-risk patients with community-acquired pneumonia. N Engl J Med 336,243-250[Abstract/Free Full Text]
  15. Fine, MJ, Smith, MA, Carson, CA, et al (1996) Prognosis and outcomes of patients with community-acquired pneumonia. JAMA 275,134-141[Abstract]
  16. Ruiz, M, Ewig, S, Torres, A, et al (1999) Severe community-acquired pneumonia. Am J Respir Crit Care Med 160,923-929[Abstract/Free Full Text]
  17. Meehan, TP, Fine, MJ, Krumholz, HM, et al (1997) Quality of care, process and outcomes in elderly patients with pneumonia. JAMA 278,2080-2084[Abstract]



This article has been cited by other articles:


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S. G. Campbell, T. J. Marrie, R. Anstey, G. Dickinson, and S. Ackroyd-Stolarz
The Contribution of Blood Cultures to the Clinical Management of Adult Patients Admitted to the Hospital With Community-Acquired Pneumonia: A Prospective Observational Study
Chest, April 1, 2003; 123(4): 1142 - 1150.
[Abstract] [Full Text] [PDF]


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