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* From the Departments of Internal Medicine (Drs. Shim, Lee, Koh, W.S. Kim, D.S. Kim, and W.D. Kim) and Clinical Pathology (Dr. Chi), Division of Pulmonary and Critical Care Medicine, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Korea.
Correspondence to: Tae Sun Shim, MD, Department of Internal Medicine, Division of Pulmonary and Critical Care Medicine, University of Ulsan College of Medicine, Asan Medical Center, 3881 Pungnap-dong, Songpa-gu, Seoul 138600, Korea; e-mail: shimts{at}www.amc.seoul.kr
| Abstract |
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Design and setting: A prospective clinical study at a tertiary referral medical center.
Participants and methods: Four hundred fiberoptic bronchoscopic procedures were performed, using seven bronchoscopes on 335 consecutive patients, for therapeutic or diagnostic purposes. Serial bronchial aspirates were collected and tested for M tuberculosis, using COBAS AMPLICOR (CA). Bronchoscopes were cleaned and disinfected automatically, between patient use, by the same endoscope washer. The name of each bronchoscope and the sequence of its use were recorded, together with the sequence of washing. The CA results were compared with the bacteriologic and histologic results for M tuberculosis infection. When there was a suspicion of contamination, outward polymerase chain reaction analysis was performed.
Results: Of 392 specimens (332 subjects), excluding the 8 specimens (4 subjects) in which bacteriologic and histologic analyses were omitted, a smear-positive result for acid-fast bacilli (AFB), culture-positive or biopsy-positive results, and CA-positive results were obtained in 16, 49, and 32 specimens, respectively. In AFB smear-positive subjects, the sensitivity, specificity, positive predictive values (PPVs), and negative predictive values (NPVs) were 92%, 67%, 92%, and 67%, respectively. In AFB smear-negative subjects, the sensitivity, specificity, PPV, and NPV values were 38%, 99%, 74%, and 94%, respectively. The CA test was more sensitive than the AFB smears for the diagnosis of pulmonary tuberculosis (53% vs 27%, respectively; p < 0.05). False-positive CA results were seen in only six specimens. Three of these six subjects received a diagnosis of pulmonary tuberculosis on clinical and radiologic grounds, and none of the six results seemed to be associated with bronchoscopic cross-contamination.
Conclusions: Adequately cleaned and disinfected bronchoscopes did not cause false-positive amplification test results for M tuberculosis on bronchial aspirates by cross-contamination. Furthermore, sensitivity was greater with the CA tests. Therefore, CA tests on bronchial aspirates seem to be useful in the diagnosis of pulmonary tuberculosis.
Key Words: bronchoscopy direct amplification test Mycobacterium tuberculosis pulmonary tuberculosis
| Introduction |
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Fiberoptic bronchoscopy has been used successfully in the diagnosis of pulmonary tuberculosis in AFB smear-negative patients.2 DATs for Mycobacterium tuberculosis have also been applied to bronchial aspirate specimens, and have shown promising results.3 In contrast, some reports4 5 6 7 8 indicate that mycobacterial cross-contamination can occur during bronchoscopic procedures. Because even a few dead bacilli remaining after disinfection procedures can result in an amplification product in a subsequent bronchoscopic specimen, the clinical usefulness of DATs on bronchial aspirate specimens has not yet been defined. Kaul et al9 reported that 2 of 55 washing solutions (3.6%) for bronchoscopes contained amplifiable M tuberculosis DNA. Carricajo et al10 reported an experimental case in which an amplification test on the washing fluid from a bronchoscopic channel was positive for M tuberculosis, even after the bronchoscope was disinfected by exposure to 2% glutaraldehyde for 1 h.
This study was undertaken to investigate the clinical utility of DATs on bronchoscopic aspirates in the diagnosis of pulmonary tuberculosis, with particular regard to the possibility of false-positive results arising from cross-contamination via bronchoscopes. COBAS AMPLICOR (CA) [Roche Diagnostics Systems; Branchburg, NJ] was used as the DAT for the diagnosis of tuberculosis.
| Materials and Methods |
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All bronchoscopy was performed by experienced bronchoscopists, by a transoral or transnasal route. Patients were usually premedicated with IM atropine and pethidine. Lidocaine was used for topical anesthesia of the larynx and tracheobronchial trees. After examination of the bronchial trees, 5 to 10 mL of normal saline solution was instilled into the orifice of the bronchial segment in which abnormalities were likely to be located, and then aspirated back. In the cases of patients in whom the abnormalities were not confirmed, normal saline solution was instilled into both bronchial trees. In cases where mucosal abnormalities were detected or lung tissue was required, tissue was obtained using a biopsy forceps.
Sample Preparation
At least 5 mL of bronchial aspirate and sputum were collected in a sterile conical tube, and then treated with NALC-NaOH.11
After Ziehl-Neelson staining, 300 fields were examined using light microscopy at high power (x 1,000) by experienced personnel. Specimens were regarded as positive for AFB even if only one or two cells per 300 fields were observed. Cultures were grown using egg-based Ogawa medium, and growth was observed for 8 weeks, after which the M tuberculosis complex was identified using the Accuprobe test (Gen-Probe; San Diego, CA). All bronchial aspirates were stored at - 70°C until 400 bronchoscopic procedures were completed, and then the CA tests were performed collectively.
Detection of the M tuberculosis Complex in Bronchial Aspirates by CA
The CA test was performed according to the instructions of the manufacturer.12
CA uses the polymerase chain reaction (PCR) nucleic acid amplification technique, nucleic acid hybridization, and colorimetric detection of M tuberculosis. With the benchtop CA analyzer (Roche Diagnostics Systems), the amplification, addition of denaturation agent, and detection of the amplified product were automated. Briefly, the procedures are as follows. NaOH/NALC-treated specimens were washed with a respiratory specimen wash solution, after which organisms were lysed by inoculation with a respiratory specimen lysis reagent. Finally, specimens were made ready for amplification by the addition of a respiratory specimen neutralization reagent. After the processed specimens were added to the amplification mixture, which contains an internal control and urasyl-N-glycosylase, PCR was performed. The internal control identifies specimens containing substances that may interfere with PCR amplification. When heated in the first thermal cycling step at the alkaline pH of the amplification mixture, urasyl-N-glycosylase breaks the carry-over amplicon DNA at deoxyuridine, thereby rendering the DNA nonamplifiable. The required number of cycles is automatically performed by the CA. Following PCR amplification, a suspension of magnetic particles coated with an oligonucleotide probe specific for M tuberculosis is added to the amplicon. After the magnetic particles are washed to remove unbound material, avidin-horseradish peroxidase conjugate binds to the biotin-labeled amplicon captured by the specific DNA probe. After removing unbound conjugates by washing, substrate is added. Specimens with A660
0.35 are interpreted as positive for M tuberculosis. Specimens with A660 < 0.35, and internal controls with A660
0.35, are interpreted as negative for M tuberculosis.
Data Analysis
After CA results were obtained, each patients clinical and laboratory records were reviewed, together with chest radiography. The diagnosis of tuberculosis was confirmed only when cultures of sputum or bronchial aspirates were positive for M tuberculosis, or if lung or bronchial biopsy specimens showed chronic granulomatous inflammation with caseation necrosis. Clinical tuberculosis was defined as radiologic findings compatible with tuberculosis, which improved with antituberculosis drug treatment, without bacteriological or histologic confirmation of tuberculosis. In cases of clinical tuberculosis, with histologic evidence of chronic granulomatous inflammation without caseation necrosis, tuberculosis was considered to be confirmed. The sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of CA testing were calculated, using bacteriologic or histologic diagnoses as the ultimate diagnostic standard for tuberculosis. In the case of patients with false-positive CA results, the clinical history and radiographic results were investigated. Bacteriologic and CA results of the patients who underwent bronchoscopy using the same bronchoscope immediately before the patient with a false-positive CA result were reviewed to investigate the possibility of contamination via the bronchoscopes. Bacteriologic and CA results of the patients in whom the bronchoscope was washed immediately before the patients who underwent bronchoscopy using the same bronchoscopy immediately before the patients with false-positive CA result were reviewed to investigate the possibility of cross-contamination via the bronchoscope washer.
Outward PCR Analysis
In one case with a positive CA result in which contamination was suspected through the washing procedure, outward PCR genetic relatedness was tested by molecular fingerprinting employing the IS6110-based outward PCR method.13
14
In brief, outward PCR employed the single primer based on the invert-repeat fragment located at the ends of IS6110 whose sequence was 5'-GACIIICCGGGGCGGTTCA-3', where "I" was inosine. The 3' end of the primer was directed outwardly from both sides of the inverted repeats present in IS6110, amplifying the flanking sequences between two copies of IS6110. PCR was carried out with approximately 10 ng of genomic DNA in a final volume of 50 µL in a reaction buffer containing 0.4 pmol primers, 2 mM MgCl2, 200 µL of deoxynucleotide triphosphates, and 2.5 U of Taq polymerase. DNA samples were denatured by incubation for 3 min at 95°C before amplification for 35 cycles at 94°C for 1 min, 58°C for 1 min, and 72°C for 2 min using a thermocycler (GeneAmp PCR System 9600; Perkin Elmer; Foster City, CA). After the last amplification cycle, the samples were incubated for 7 min at 72°C to complete the elongation of the PCR intermediate products. Positive and negative controls were used for each reaction. The positive control was the reference strain M tuberculosis H37Rv, and the negative control was the PCR mix without DNA. The PCR products were analyzed by electrophoresis through a 1.2% agarose gel and stained with ethidium bromide. Each sample was tested at least three times in order to verify the reproducibility of the results.
Statistical Analysis
Statistical analysis was performed using software (SPSS for Windows version 7.5; SPSS; Chicago, IL). The McNemar test was used to compare of the sensitivity of direct AFB smear and CA testing. Data are expressed as mean ± SD, and statistical significance was defined as p < 0.05.
| Results |
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With regard to the washing order of the bronchoscopes, there were three episodes of possible contamination via bronchoscope washer. However, of three events of possible contamination, two had truly confirmed tuberculosis; one was confirmed by histologic diagnosis, and the other had a positive culture for M tuberculosis in another sputum examination. The remaining patient (Fig 1 , C) had lung cancer and no evidence of tuberculosis clinically or bacteriologically, so a contamination via bronchoscope washer could be suspected. The patient who underwent bronchoscopy using the same bronchoscope immediately before patient C had no evidence of tuberculosis, but patient B, in whom bronchoscope was washed immediately before the patients who underwent bronchoscopy using the same bronchoscopy immediately before the patient C, had a bacteriologically confirmed tuberculosis. However, in this case, outward PCR analysis revealed that they were different strains (Fig 1) .
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Discrepant Analysis
Six patients had false-positive CA results. However, considering the sequence of bronchoscopy, the order of bronchoscope washing, and the result of outward PCR analysis, there was no evidence of contamination through the bronchoscopes or bronchoscope washer. Of the six patients with false-positive results, three patients had a strong likelihood of tuberculosis based on clinical criteria. In the remaining three patients, we could not find any possible causes of false-positive results. Of the 20 patients (23 specimens) with false-negative CA results, all but one were AFB smear-negative. All bacteriologically confirmed positive patients produced a culture of < 10 colonies, indicating a low colony count. Three AFB smear-positive patients were not considered to have tuberculosis because cultures were negative for M tuberculosis. In two patients who showed an AFB smear of one to two AFB per 300 high-power field (x 1,000), with no clinical or radiologic evidence of tuberculosis, CA gave negative results for M tuberculosis. In the other patient, who seemed to have pulmonary tuberculosis on radiologic examination and showed gradual improvement with antituberculosis treatment, CA had positive findings for M tuberculosis.
In summary, the CA tests were positive in 53% (26 of 49 cases) of confirmed tuberculosis and 33% (3 of 9 cases) of clinical tuberculosis cases. After combining the confirmed and clinical tuberculosis (58 specimens in 52 tuberculosis patients) cases, the sensitivity, specificity, PPV, and NPV of CA tests were 50% (29 of 58 cases), 99% (331 of 334 cases), 91% (29 of 32 cases), and 92% (331 of 360 cases), respectively.
| Discussion |
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In recent years, PCR and other amplification-based techniques have been widely used in the diagnosis of tuberculosis.15 16 17 18 Most studies have used sputum as the specimen from which M tuberculosis DNA has been amplified for the diagnosis of pulmonary tuberculosis. However, even these amplification techniques are relatively insensitive in smear-negative pulmonary tuberculosis.19 Therefore, because bronchoscopic procedures have increased diagnostic potential,2 20 21 some researchers have used bronchoscopic specimens for the amplification of M tuberculosis DNA in the diagnosis of tuberculosis.3 Endoscopic procedures, however, have the potential for cross-contamination of pathogens. Several investigators have reported false-positive diagnosis of tuberculosis, infection, or the development of clinical tuberculosis (even multidrug-resistant tuberculosis), related to the use of bronchoscopes.5 6 7 8 In these cases, it has been suggested that the disinfection procedures used were not performed thoroughly before the use of the bronchoscopes on subsequent patients. Carricajo et al10 showed experimentally that it is possible to obtain positive amplification results for M tuberculosis from the washing fluids of a bronchoscopic channel, even after the bronchoscope was disinfected by a 1-h exposure to 2% glutaraldehyde. Michele et al6 confirmed the transmission of M tuberculosis via a fiberoptic bronchoscope, using DNA fingerprinting analysis. Although Wong et al3 demonstrated an increased sensitivity of PCR on bronchial aspirates in the diagnosis of pulmonary tuberculosis, the false-positive rate was unacceptably high. However, until now, there has been no systematic research into the potential for false-positive results in amplification-based diagnostic techniques for M tuberculosis using bronchial aspirate specimens. This is because amplification-based techniques are more sensitive than conventional bacteriological studies, and positive results can arise from the amplification of DNA from even a few dead M tuberculosis bacilli.
As bronchoscopes are semicritical devices that come into contact with mucus membranes during use, they should be sterilized or at least undergo high-level disinfection.22 High-level disinfection is defined as the inactivation of all vegetative bacteria, mycobacteria, fungi, and viruses, but not necessarily all bacterial endospores. To meet the requirement for disinfection of endoscopes, a US Environmental Protection Agency-registered liquid sterilant/disinfectant, with objective evidence of efficacy, should be used. Of these, 2% glutaraldehyde has been widely used. The APIC recommends disinfection of endoscopes for at least 20 min, to achieve adequate high-level disinfection.22 Some previous guidelines have recommended a disinfection procedure of 30 to 40 min or more.23 24 In addition, careful cleaning before the disinfection procedure is also important in preventing the transmission of infectious organisms via bronchoscopes.
In this study, we used an automatic bronchoscope washer, with 2% glutaraldehyde as the disinfectant agent. The disinfection time was 10 min between uses, and 23 min after completion of daily use. The disinfection time between uses was somewhat shorter than that recommended in the APIC guidelines. Despite this, cross-contamination of M tuberculosis was not a problem in our bronchoscopic procedures, even when we performed the more sensitive amplification procedures for the diagnosis of tuberculosis. One possible explanation is that we employed experienced personnel for bronchoscope washing. Two experts have been working in our bronchoscopic laboratory for the last 5 years, and are well acquainted with bronchoscope washing and maintenance. They are aware of the importance of careful cleaning before automatic disinfection. Immediately following a procedure, all bronchoscopes were aggressively hand-brushed to remove remaining tissue and blood. Disinfectant and rinsing solutions were changed frequently. Routine surveillance cultures have been taken from fiberoptic bronchoscopes every month. There have been no positive culture findings for M tuberculosis in the washing fluid from bronchoscopic channels during regular monitoring for several years in our laboratory. In our opinion, regular monitoring procedures to screen for cross-contamination should include techniques that amplify M tuberculosis if bronchoscopic specimens are used for the diagnosis of tuberculosis using amplification techniques. If this regular monitoring reveals positive results for M tuberculosis DNA in a laboratory, laboratory staff should strengthen their bronchoscopic disinfection procedures.
Although 400 bronchoscopic procedures were included in this study, pulmonary tuberculosis was confirmed in only 43 patients, and usually with a low colony count of M tuberculosis. However, because bronchoscopy is usually required in cases of smear-negative, low-colony-count tuberculosis, it seems that the patient population in this study can be compared to actual clinical situations we meet in everyday practice. Of 13 smear-positive tuberculosis patients, 5 patients had positive findings in bronchial aspirates but not in sputum. Of 30 tuberculosis patients with negative results for AFB smears on sputum or bronchial aspirates, 12 patients (40%) had positive findings for M tuberculosis on CA tests. These data suggest that AFB smears and CA tests on bronchoscopic aspirates are useful for an earlier diagnosis of sputum smear-negative patients. In the study by Wong et al,3 the sensitivity of PCR on bronchial aspirate specimens in the diagnosis of smear-negative pulmonary tuberculosis was 97.2%. However, these researchers used in-house PCR assays, and false-positive rates were as high as 27% (22 of 82 cases). They did not mention why the false-positive rate was so high. It may have been due to cross-contamination via bronchoscopes, or to poor quality control. In-house PCR assays usually vary greatly between institutions in both sensitivity and specificity.25 26 There is no worldwide standardization, and it may be personnel dependent. For this reason, we selected the CA test to amplify M tuberculosis DNA in this study. The CA test, which automates amplification and detection and decreases hands-on labor, was approved by the US Food and Drug Administration. Others have reported the sensitivity of PCR on BAL specimens to be from 40 to 79%.27 28 Had we used BAL fluid instead of bronchial aspirates, the sensitivity may have been improved. However, in this study, we do not know whether the CA test on bronchial aspirates has some advantages over the test done on sputum specimens. Our results are comparable with the results of other studies performed on sputum specimens, which showed about 50% sensitivity of DAT in AFB smear-negative patients.19 Further study is needed to compare the diagnostic efficacy of DATs between sputum and bronchial aspirates, and BAL fluid specimens.
In contrast to a previous study that used restriction fragment-length polymorphism (RFLP) analysis to identify contamination arising via bronchoscopy,6 we performed outward PCR analysis because the amount of DNA was too small to do RFLP analysis. Although we could not perform outward PCR analysis in all consecutively positive cases, because of PCR failure in some specimens, we could exclude the possibility of contamination through the bronchoscope washer in the most suspicious case. As others suggested,13 14 it could be used as a rapid and simple method for typing isolates of M tuberculosis, especially in cases where the amount of DNA was not enough to do RFLP analysis as in this case.
In conclusion, amplification-based techniques can be used for the diagnosis of pulmonary tuberculosis in bronchial aspirate specimens without the increased risk of cross-contamination, if adequate cleaning and disinfection procedures are adopted. To perform diagnostic tests using amplification techniques, each bronchoscopic laboratory should monitor cleaning and disinfection procedures continuously, until generalized guidelines for the use of amplification techniques in bronchoscopic specimens have been formulated.
| Acknowledgements |
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| Footnotes |
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Received for publication February 6, 2001. Accepted for publication October 5, 2001.
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